Differential Expression (pre-computed by edgeR ) cases as per experiment designs reported in respective publication.

S. no.PublicationDescription EdgeR Differential Expression of known miRNA
 Wheat  
1.aMingming Xin, Yu Wang, Yingyin Yao1, Na Song, Zhaorong Hu1, Dandan Qin, Chaojie Xie, Huiru Peng, Zhongfu Ni and Qixin Sun (2011). Identification and characterization of wheat long non-protein coding RNAs responsive to powdery mildew infection and heat stress by using microarray analysis and SBS sequencing.Triticum aestivum(8866), young leaf(control vs Powdery mildew infection)Wheat_SRR101427_youngleafControl Vs Wheat_SRR101428_youngleafinfectionpowderymildew
1.bMingming Xin, Yu Wang, Yingyin Yao1, Na Song, Zhaorong Hu1, Dandan Qin, Chaojie Xie, Huiru Peng, Zhongfu Ni and Qixin Sun (2011). Identification and characterization of wheat long non-protein coding RNAs responsive to powdery mildew infection and heat stress by using microarray analysis and SBS sequencing.Triticum aestivum(pm30), young leaf (control vs Powdery mildew infection)Wheat_SRR101429_youngleafControl Vs Wheat_SRR101430_youngleafinfectionpowderymildew
2.aZhonghui Tang, Liping Zhang, Chenguang Xu, Shaohua Yuan, Fengting Zhang, Yonglian Zheng, and Changping Zhao(2012). Uncovering Small RNA-Mediated Responses to Cold Stress in a Wheat Thermosensitive Genic Male-Sterile Line by Deep Sequencing.Triticum aestivum, spike (anther length ~ 1.5 mm, control Vs cold treatment)Wheat_SRR449365_spiketissuesColdtreatment Vs Wheat_SRR449368_spiketissuesControl
2.bZhonghui Tang, Liping Zhang, Chenguang Xu, Shaohua Yuan, Fengting Zhang, Yonglian Zheng, and Changping Zhao(2012). Uncovering Small RNA-Mediated Responses to Cold Stress in a Wheat Thermosensitive Genic Male-Sterile Line by Deep Sequencing.Triticum aestivum, spike (anther length ~ 2.2 mm, control Vs cold treatment)Wheat_SRR449366_spiketissuesColdtreatment Vs Wheat_SRR449369_spiketissuesControl
2.cZhonghui Tang, Liping Zhang, Chenguang Xu, Shaohua Yuan, Fengting Zhang, Yonglian Zheng, and Changping Zhao(2012). Uncovering Small RNA-Mediated Responses to Cold Stress in a Wheat Thermosensitive Genic Male-Sterile Line by Deep Sequencing.Triticum aestivum, spike (anther length ~ 3.0 mm, control Vs cold treatment)Wheat_SRR449367_spiketissuesColdtreatment Vs Wheat_SRR449370_spiketissuesControl
    
 Rice  
3Li T et al., "Identification and analysis of seven H2O2-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica).", Nucleic Acids Res, 2010 Nov 27;39(7):2821-33Oryza sativa: indica 93-11, seedlings (Control Vs H2O2 treatment)Rice_SRR062265_seedlingControl12Day Vs Rice_SRR062266_seedlingH2O212Day
    
 Maize  
4Zhai J et al., "Plant microRNAs display differential 3' truncation and tailing modifications that are ARGONAUTE1 dependent and conserved across species.", Plant Cell, 2013 Jul 9;25(7):2417-28Zea mays (B73), Seedling leaf (Wild type Vs Hybrid)Maize_SRR924283_SeedlingleafB73xW22_hen1_1mutant Vs Maize_SRR924284_SeedlingleafB73_hen1_1mutant
5.aBarber WT, Zhang W, Win H et al. (2012) Repeat associated small RNAs vary among parents and following hybridization in maize. Proc Natl Acad Sci;109:10444-9.Zea mays (Mo17), Developing ear (High N Vs low N)Maize_SRR488777_developingearMo17HighN Vs Maize_SRR488780_developingearMo17LowN
5.bBarber WT, Zhang W, Win H et al. (2012) Repeat associated small RNAs vary among parents and following hybridization in maize. Proc Natl Acad Sci;109:10444-9.Zea mays (B73), Developing ear (High N Vs low N)Maize_SRR488776_developingearB73HighN Vs Maize_SRR488779_developingearB73LowN
5.cBarber WT, Zhang W, Win H et al. (2012) Repeat associated small RNAs vary among parents and following hybridization in maize. Proc Natl Acad Sci;109:10444-9.Zea mays (B73 *Mo17), Developing ear (High N Vs low N)Maize_SRR488778_developingearB73xMo17HighN Vs Maize_SRR488781_developingearB73xMo17LowN
6.aLi XM, Sang YL, Zhao XY et al. (2013) High-Throughput Sequencing of Small RNAs from Pollen and Silk and Characterization of miRNAs as Candidate Factors Involved in Pollen-Silk Interactions in Maize. PLoS One;8, DOI: 10.1371/journal.pone.0072852.Zea mays (B73), Silk (Mature silk Vs pollinated silk)Maize_SRR768250_maturesilks Vs Maize_SRR768251_pollinatedsilks
6.bLi XM, Sang YL, Zhao XY et al. (2013) High-Throughput Sequencing of Small RNAs from Pollen and Silk and Characterization of miRNAs as Candidate Factors Involved in Pollen-Silk Interactions in Maize. PLoS One;8, DOI: 10.1371/journal.pone.0072852.Zea mays (B73), Silk (Mature pollen Vs invitrogerminatedpollen)Maize_SRR768248_maturepollen Vs Maize_SRR768249_invitrogerminatedpollens