Differential Expression (pre-computed by edgeR ) cases as per experiment designs reported in respective publication.
| S. no. | Publication | Description | EdgeR Differential Expression of known miRNA |
|---|---|---|---|
| Wheat | |||
| 1.a | Mingming Xin, Yu Wang, Yingyin Yao1, Na Song, Zhaorong Hu1, Dandan Qin, Chaojie Xie, Huiru Peng, Zhongfu Ni and Qixin Sun (2011). Identification and characterization of wheat long non-protein coding RNAs responsive to powdery mildew infection and heat stress by using microarray analysis and SBS sequencing. | Triticum aestivum(8866), young leaf(control vs Powdery mildew infection) | Wheat_SRR101427_youngleafControl Vs Wheat_SRR101428_youngleafinfectionpowderymildew |
| 1.b | Mingming Xin, Yu Wang, Yingyin Yao1, Na Song, Zhaorong Hu1, Dandan Qin, Chaojie Xie, Huiru Peng, Zhongfu Ni and Qixin Sun (2011). Identification and characterization of wheat long non-protein coding RNAs responsive to powdery mildew infection and heat stress by using microarray analysis and SBS sequencing. | Triticum aestivum(pm30), young leaf (control vs Powdery mildew infection) | Wheat_SRR101429_youngleafControl Vs Wheat_SRR101430_youngleafinfectionpowderymildew |
| 2.a | Zhonghui Tang, Liping Zhang, Chenguang Xu, Shaohua Yuan, Fengting Zhang, Yonglian Zheng, and Changping Zhao(2012). Uncovering Small RNA-Mediated Responses to Cold Stress in a Wheat Thermosensitive Genic Male-Sterile Line by Deep Sequencing. | Triticum aestivum, spike (anther length ~ 1.5 mm, control Vs cold treatment) | Wheat_SRR449365_spiketissuesColdtreatment Vs Wheat_SRR449368_spiketissuesControl |
| 2.b | Zhonghui Tang, Liping Zhang, Chenguang Xu, Shaohua Yuan, Fengting Zhang, Yonglian Zheng, and Changping Zhao(2012). Uncovering Small RNA-Mediated Responses to Cold Stress in a Wheat Thermosensitive Genic Male-Sterile Line by Deep Sequencing. | Triticum aestivum, spike (anther length ~ 2.2 mm, control Vs cold treatment) | Wheat_SRR449366_spiketissuesColdtreatment Vs Wheat_SRR449369_spiketissuesControl |
| 2.c | Zhonghui Tang, Liping Zhang, Chenguang Xu, Shaohua Yuan, Fengting Zhang, Yonglian Zheng, and Changping Zhao(2012). Uncovering Small RNA-Mediated Responses to Cold Stress in a Wheat Thermosensitive Genic Male-Sterile Line by Deep Sequencing. | Triticum aestivum, spike (anther length ~ 3.0 mm, control Vs cold treatment) | Wheat_SRR449367_spiketissuesColdtreatment Vs Wheat_SRR449370_spiketissuesControl |
| Rice | |||
| 3 | Li T et al., "Identification and analysis of seven H2O2-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica).", Nucleic Acids Res, 2010 Nov 27;39(7):2821-33 | Oryza sativa: indica 93-11, seedlings (Control Vs H2O2 treatment) | Rice_SRR062265_seedlingControl12Day Vs Rice_SRR062266_seedlingH2O212Day |
| Maize | |||
| 4 | Zhai J et al., "Plant microRNAs display differential 3' truncation and tailing modifications that are ARGONAUTE1 dependent and conserved across species.", Plant Cell, 2013 Jul 9;25(7):2417-28 | Zea mays (B73), Seedling leaf (Wild type Vs Hybrid) | Maize_SRR924283_SeedlingleafB73xW22_hen1_1mutant Vs Maize_SRR924284_SeedlingleafB73_hen1_1mutant |
| 5.a | Barber WT, Zhang W, Win H et al. (2012) Repeat associated small RNAs vary among parents and following hybridization in maize. Proc Natl Acad Sci;109:10444-9. | Zea mays (Mo17), Developing ear (High N Vs low N) | Maize_SRR488777_developingearMo17HighN Vs Maize_SRR488780_developingearMo17LowN |
| 5.b | Barber WT, Zhang W, Win H et al. (2012) Repeat associated small RNAs vary among parents and following hybridization in maize. Proc Natl Acad Sci;109:10444-9. | Zea mays (B73), Developing ear (High N Vs low N) | Maize_SRR488776_developingearB73HighN Vs Maize_SRR488779_developingearB73LowN |
| 5.c | Barber WT, Zhang W, Win H et al. (2012) Repeat associated small RNAs vary among parents and following hybridization in maize. Proc Natl Acad Sci;109:10444-9. | Zea mays (B73 *Mo17), Developing ear (High N Vs low N) | Maize_SRR488778_developingearB73xMo17HighN Vs Maize_SRR488781_developingearB73xMo17LowN |
| 6.a | Li XM, Sang YL, Zhao XY et al. (2013) High-Throughput Sequencing of Small RNAs from Pollen and Silk and Characterization of miRNAs as Candidate Factors Involved in Pollen-Silk Interactions in Maize. PLoS One;8, DOI: 10.1371/journal.pone.0072852. | Zea mays (B73), Silk (Mature silk Vs pollinated silk) | Maize_SRR768250_maturesilks Vs Maize_SRR768251_pollinatedsilks |
| 6.b | Li XM, Sang YL, Zhao XY et al. (2013) High-Throughput Sequencing of Small RNAs from Pollen and Silk and Characterization of miRNAs as Candidate Factors Involved in Pollen-Silk Interactions in Maize. PLoS One;8, DOI: 10.1371/journal.pone.0072852. | Zea mays (B73), Silk (Mature pollen Vs invitrogerminatedpollen) | Maize_SRR768248_maturepollen Vs Maize_SRR768249_invitrogerminatedpollens |